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· Biochemistry, physiology, and genetics of bacterial systems Research Interests · GeneChips Analyses of lung surfactant lipid degradation of Pseudomonas aeruginosa as a model to lung diseases of cystic fibrosis patients and nosocomial pneumonia · Genetic tools development for bacteria (E. coli, Sphingobium, and P. aeruginosa) · DNA-shuffling (directed-evolution) of genes involved in degradation of the pollutant pentachlorophenol (PCP) and genetic engineering of 'Super Bugs' · Functional and structural characterization of the essential Asd protein of P. aeruginosa (a cystic fibrosis pathogen) and Burkholderia pseudomallei (causative agent of melioidosis)
In silico homology modeling (DeepView, http://swissmodel.expasy.org/) of the Burholderia pseudomallei (strain 1026b; DeShazer et al., J. Bacteriol. 179(7):2116-2125) essential Asd protein, using the known Vibrio cholerae Asd structure (Blanco et al., Protein Science 12:27-33) as a template, indicates high homology at the active site. Asd of these two species are much more conserved than compared to the Escherichia coli Asd protein (Hadfield et al. J. Mol. Biol. 289:991-1002). Abbreviations and Symbols: blue,
residues of B. pseudomallei; red, residues of V. cholerae,
inhibitor (black, S-methyl-L-cysteine sulfoxide); DAP, diaminopimelic
acid; NADP (yellow); and hydrogen bonds (green dashed lines). Amino acid
positions are from the B. pseudomallei protein sequence. Research Oportunities · Motivated graduate and undergraduate students, stipend (Research Assistantship or Teaching Assistantship) and free tuition available for accepted graduate students in our department [www.hawaii.edu/microbiology/grad.htm]. · Postdoctoral positions available with pre-applied fellowship(s) Active Grants Centers of Biomedical
Research Excellence (COBRE) Program (P20RR018727), National Center for
Research Resources, National Institutes of Health (PI, Dr. Ric Yanagihara) Hawaii Community Foundation
Teaching Undergraduate: - Microbiology
351 (Lecture), Biology of Microorganisms Graduate: - Microbiology
685, Molecular and Cellular Bacterial Pathogenesis |
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Last
updated April 20, 2005 |
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