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August 10, 2003
 
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Lake Laysan [back]  

Laysan Water Chemistry

Temperature and salinity in Lake Laysan varied little around 23ºC and 80 ppt, respectively (See Fig. A). Chlorophyll a concentrations did not exceed 1 mg/L (See Fig. B). Hydrogen sulfide concentrations were low throughout the water column, and decreased with depth (See Fig. B). DON comprised much of the ~550 mM total nitrogen pool (See Fig. C), while NO3- and NH4+ concentrations were each only fractions of total N (See Fig. D). Total phosphorus increased from 8 to ~12 mM between 0.3 and 7.5 m, mirroring increases in SNP with depth; SRP varied little around 3 mM through the water column (See Fig. E). SRSi concentrations varied 5-fold between 0.3 and 4 m (See Fig. F).

Laysan water chemistry figure

 

 

Laysan Clones/cultures

Clone libraries based on partial 16S rDNA genes amplified from community DNA from Lake Laysan water samples contained inserts that affiliated with Archaea and Bacteria sequences in the public domain (Table 1). In total, 30 unique operational taxonomic units (OTUs) were identified, where all members of a single OTU shared =97% identity. The Bacteria were represented by 29 OTUs belonging to 19 families, or other ranked or unclassified taxa in each of the five Proteobacteria sub-divisions, the Bacteroidetes, Chloroflexi, Firmicutes, Deinococcaceae, Verrucomicrobiaceae, and Planctomycetales. No OTU occurred in more than two depth samples from the lake, but the a- and g-Proteobacteria did occur throughout the water column; these sub-divisions also contained the largest number of OTUs (Table 1). All a-Proteobacteria OTUs belonged in the Rhodobacteraceae. Cloned representatives of the Bacteroidetes included one OTU that affiliated with obligate psychrophiles (Psychroflexus spp., Family Flavobacteriaceae) from Antarctic sea-ice. The b-Proteobacteria, Chloroflexi, Deinococci and Verrucomicrobia were each represented by just one OTU (Table 1).

Forty-two pure bacterial cultures derived from Lake Laysan. On the basis of 16S rRNA homologies these cultures affiliated with 27 taxonomically distinct strains in 13 families or unclassified taxa in the a-, g-, and e-Proteobacteria, Firmicutes, Bacteroidetes, and the Chlorobiaceae (Table 1). Cultures from the g-Proteobacteria belonged in the Vibrionaceae, Alteromonadaceae, Halomonadaceae, and the Xanthomonas group. Representatives of four a-Proteobacteria families were cultivated, three of which were not represented in clone libraries from the same sample.

Eight bacteria cultivated from Laysan shared <97% 16S rRNA sequence identity with bacteria in the public domain. Five of the eight are a-Proteobacteria. Two cultures belong in the Bacteroidetes; the closest neighbors of one of these cultures is Psychroflexus torquis, an obligate psychrophile from Antarctic sea-ice. Phenotypic data including fatty acid and substrate assimilation support placement of this strain as a new, mesophilic species in the genus Psychroflexus (Donachie et al, in press). The only e-Proteobacterium cultivated from Laysan shares <96% 16S rRNA identity with an Arcobacter sp., its nearest cultivated neighbor based on 16S rDNA sequence identity. All strains considered potentially novel in terms of 16S rRNA identities have been characterized on the basis of whole cell fatty acid profiles, substrate utilization, and other phenotypic properties. These data support our contention that they are new species and in some cases new genera.


 
Laysan Clones Table  
Division OTU Representative clone NT Closest relative Homology (%) Taxon Accession #
Euryarchaeota 1 LA1-A10 640 Archaeon JDS-1 AF196290 527/532 (99.06) Halobacteriaceae AF513927
a-Proteobacteria 2 LA1-B32N 1427 Roseobacter sp. AF098495 1359/1416 (95.97) Rhodobacteraceae AF513928
  3 LA1-B42N 1421 Rhodobaca bogoriensis AF248638 1365/1424 (95.86) Rhodobacteraceae AF513929
  4 LA4-B49N 1380 Uncultured Roseobacter AF245628 1120/1162 (96.39) Rhodobacteraceae AF513930
  5 LA7-B19N 1424 Paracoccus sp. AB025192 1311/1399 (93.71) Rhodobacteraceae AF513933
  6

LAS-B23N

PH-B13

1426 a-Proteobacterium AJ133762 1361/1413 (96.32) Rhodobacteraceae AF513934
b-Proteobacteria 7 LA1-B29N 1492 Achromobacter xylosoxidans AF411021 1446/1490 (97.05) Alcaligenaceae AF513937
g-Proteobacteria 8 PH-B39N 1497 Aeromonas bestiarum X60406 1491/1497 (99.60) Aeromonadaceae AF513938
  9 LAS-B15N, PH-B55N 1494 Alteromonas sp. AF427478 1482/1493 (99.26) Alteromonadaceae AF513939
  10 LA4-B63N 1491 Thiorhodovibrio winogradskyi AB016986 1407/1456 (96.63) Chromatiaceae AF513942
  11 LAS-B37N 1504 Thiobacillus halophilus U58020 1492/1504 (99.20) Chromatiaceae AF513944
  12 LA1-A16 1002 Alkalispirillum mobile AF114783 923/975 (94.67) Ectothiorhodospiraceae AF513945
  13 LA7-B9 1477 Alcalilimnicola halodurans AJ404972 1389/1474 (94.23) Ectothiorhodospiraceae AF513947
  14 LA1-B44N 1451 Thiomicrospira crunogena AF069959 1366/1432 (95.39) Piscirikettsia AF513948
d-Proteobacteria 15 LA30-B273 1518 Olavius algarvensis sulfate-reducing endosymbiont AF328857 1374/1518 (90.51) d-Proteobacteria AF513951
e-Proteobacteria 16 LA4-B52N 1471 Sulfurospirillum sp. AF357199 1366/1465 (93.24) unclassified AF513952
  17 LA7-A15N 986 Sulfurospirillum arcachonense Y11561 901/958 (94.05) unclassified AF513953
  18 LA7-A3N 1137 Campylobacter helveticus U03022 826/919 (89.88) Campylobacter AF513954
Cytophagales 19 LA1-B7 968 Flavobacterium sp. AF386740 941/953 (98.74) Flavobacteriaceae AF513955
  20 LA7-B21N 1482 Uncultured CFB bacterium AF195429 904/979 (92.34) Cytophagales AF513957
  21 LAS-B39N 1487 Psychroflexus torquis U85881 1381/1457 (94.78) Flavobacteriaceae AF513958
Chloroflexi 22 LAS-B16N 1458 Uncultured bacterium AF142947 853/918 (92.92) Chloroflexi AF513960
Actinobacteria 23 LA1-B9 885 Unidentified Actinobacterium AJ292034 810/859 (94.30) Actinobacteridae AF513961
Firmicutes 25 PH-B53N 1514 Bacillus sp. AB066347 1500/1506 (99.60) Bacillaceae AF513963
Deinococcales 26 LA7-B27N 1483 Uncultured Deinococci bacterium AY250871 504/559 (90.16) Deinococcaceae AF513964
Verrucomicrobiaceae 27 LA1-B30N 1481 Uncultured Crater Lake bacterium AF316731 1061/1158 (91.62) Verrucomicrobiaceae AF513965
Planctomycetales 28 LA4-B39N 1472 Uncultured bacterium AF234144 978/1095 (89.32) Planctomycetales AF513966
  29 LA4-B40N 1458 Planctomyces brasiliensis AJ231190 1360/1431 (95.04) Planctomycetaceae AF513967
  30 LA7-A16N 1014 Uncultured Planctomycete AF424502 794/936 (84.83) Planctomycetales AF513968
     
Laysan Cultures Table    
Taxon Culture1 Depth (m) 2 NT Closest relative Homology (%) Family/Group Accession #
a-Proteobacteria LA5 0.3 1364 a-Proteobacterium AJ133762 1288/1366 (94.29) Rhodobacteraceae  AF513437
  LA7 1 1363 Roseobacter sp. AF098495 1305/1366 (95.53) Rhodobacteraceae  AF513438
  LA9 4 1280 Marine bacterium AJ002565 1194/1255 (95.14) Rhodobacteraceae  AF513439
  LA19 1 1343 Glacial ice bacterium AF479378 1323/1334 (98.50) Sphingomonadaceae  AF513440
  LA33B, LA25 0.3, 4 1384 a-Proteobacterium AB015896 1299/1400 (92.79) Rhodobacteraceae  AF513441
  LA38BS 0.3 1254 Rhodovulum adriaticum D16418 1244/1252 (99.36) Rhodobacteraceae  AF513442
  LA45 7.5 1398 Rhodospirillum salexigens M59070 1350/1374 (98.25) Rhodospirillaceae  AF513443
  LA49 0.3 1241 Maricaulis virginensis AJ301667 1208/1209 (99.92) Rhodobacteraceae  AF513444
  LA51 0.3 1182 a-Proteobacterium AB010864 1168/1179 (99.07) Rhodobacteraceae  AF513445
  LA52 7.5 1330 a-Proteobacterium AB013079 1293/1313 (98.48) Rhizobiaceae  AF513446
g-Proteobacteria LA6, LA15, LA32B, LA38A, LA38C, LA39, LA40 0.3, 1, 0.3, 0.3 0.3, 0.3, 1 1436 Vibrio sp.3 AF064637 1428/1432 (99.72) Vibrionaceae  AF513447
  LA13, LA4 7.5, 0.3 1437 Marinobacter sp. AF199440 1409/1429 (98.60) Alteromonadaceae  AF513448
  LA18t, LA2, LA16, LA23 7.5, 0.3, 1, 4 1466 Salinivibrio costicola X74699 1439/1458 (98.56) Vibrionaceae  AF513449
  LA26 4 1441 Idiomarina baltica AJ440214 1437/1440 (99.79) Alteromonadaceae  AF513450
  LA34A, LA34B 7.5, 7.5 1420 Marinobacter sp. U61848 1407/1411 (99.72) Alteromonadaceae  AF513451
  LA37 7.5 1437 Stenotrophomonas maltophilia AB008509 1426/1435 (99.37) Xanthomonas  AF513452
  LA44, LA43 7.5, 7.5 1420 Deleya salina X87217 1394/1413 (98.66) Halomonadaceae  AF513453
  LA50 0.3 1418 Marinobacter sp. AF237685 1379/1418 (97.25) Alteromonadaceae  AF513454
e-Proteobacteria LA31B 0.3 1402 Arcobacter sp. L42994 1345/1402 (95.93) Campylobacter  AF513455
Cytophagales LA1 0.3 1428 Psychroflexus torquis U85881 1350/1433 (94.21) Flavobacteriaceae  AF513434
 (syn. CFB) LA8, LA11 1, 7.5 1405 Flavobacterium sp. AF386740 1343/1351 (99.41) Flavobacteriaceae  AF513435
  LA48 0.3 1396 Flexibacter tractuosus M58789 1346/1391 (96.76) Flexibacteraceae  AF513436
Chlorobi LA53 0.3 1462 Prosthecochloris aestuarii AJ291826 1423/1452 (98.00) Chlorobiaceae  AF513460
Firmicutes LA10 4 1378 Bacillus pumilis AB048252 1344/1354 (99.26) Bacillaceae  AF513456
  LA28, LA30 4, 0.3 1432 Glacial ice bacterium AF479336 1424/1424 (100) Bacillaceae  AF513457
  LA38BB 0.3 1434 Bacillus sp. AF169535 1369/1398 (97.93) Bacillaceae  AF513458
  LA42 7.5 1488 Halobacillus trueperi AJ310149 1412/1441 (97.99) Bacillaceae  AF513459

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