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Last updated |
| August 10, 2003 |
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Summary of Clones/Cultures
from the Lakes studied |
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Table
1. Number and affiliation
of Operational Taxonomic Units (OTUs) defined in clone libraries from
the site listed, along with the number of phylogenetically distinct cultures.
All clones in an OTU share =97% identity over at least 1200 nucleotides. |
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Laysan |
Laysan |
Kauhako |
Kauhako |
Waiau |
Waiau |
SE Island |
SE Island |
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| Taxon |
Clones |
Cultures |
Clones |
Cultures |
Clones |
Cultures |
Clones |
Cultures |
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| Actinobacteria |
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2 |
5 |
6 |
3 |
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| a-Proteobacteria |
6 |
10 |
10 |
11 |
1 |
|
1 |
3 |
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| b-Proteobacteria |
1 |
|
2 |
1 |
3 |
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| g-Proteobacteria |
7 |
8 |
12 |
10 |
9 |
3 |
2 |
11 |
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| d-Proteobacteria |
1 |
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2 |
1 |
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| e-Proteobacteria |
3 |
1 |
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1 |
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| Bacteroidetes |
3 |
3 |
1 |
3 |
3 |
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| Chlamydiae |
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1 |
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| Chlorobi |
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1 |
2 |
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| Chloroflexi |
1 |
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| Cyanobacteria |
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1 |
2 |
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1 |
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| Deinococci |
1 |
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| Fibrobacter/Acidobacter |
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1 |
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| Firmicutes |
3 |
3 |
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13 |
5 |
1 |
2 |
3 |
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| Planctomycetes |
3 |
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5 |
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3 |
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| Verrucomicrobia |
1 |
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2 |
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2 |
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| Candidate Div. BRC1 |
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1 |
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| Candidate Div. OP3 |
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1 |
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| Candidate Div. OP11 |
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1 |
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| Candidate Div. TM7 |
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1 |
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| Euryarchaeota |
1 |
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1 |
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Table
2. Potentially novel
Bacteria isolated during our Hawaiian lake work and other environmental
projects
Note that the Bacteroidetes LA1 is now Psychroflexus
tropicus, sp. nov., and the g-Proteobacterium
L2-TR is Idiomarina loihiensis, sp. nov. |
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| Source |
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Strain |
NT |
Nearest neighbor |
Accession# |
Identity |
%ID |
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Actinobacteria |
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| LK |
1 |
K2-78 |
1497 |
Arthrobacter cumminsii |
X93354 |
1391/1472 |
94.5 |
| LK |
2 |
KA72 |
1291 |
Arthrobacter sp. |
AB076400 |
1237/1275 |
97.02 |
| LK |
3 |
K2-27 |
1492 |
Cellulomonas cartae |
X79456 |
1410/1467 |
96.11 |
| LK |
4 |
K2-66 |
1526 |
Nesterenkonia lacusekhoensis |
AJ290397 |
1410/1464 |
96.31 |
| LO |
5 |
Ph1 |
767 |
Corynebacterium cf. aquaticum
|
AJ244681 |
749/781 |
95.9 |
| LO |
6 |
Ph10 |
848 |
Kocuria sp. |
AB094467 |
657/679 |
96.76 |
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Bacteroidetes |
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| LK |
1 |
K2-15 |
1499 |
Cellulophaga sp. |
AY035869 |
1280/1427 |
89.7 |
| LK |
2 |
K2-1 |
1506 |
Cyclobacterium sp. |
AJ244689 |
1404/1489 |
94.09 |
| LA |
3 |
LA48 |
1396 |
Flexibacter tractuosus |
M58789 |
1346/1391 |
96.76 |
| LA |
4 |
LA1 |
1428 |
Psychroflexus torquis |
U85881 |
1350/1433 |
94.21 |
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a-Proteobacteria |
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| LK |
1 |
K2-11 |
1455 |
a-Proteobacterium |
AJ133762 |
1363/1412 |
96.53 |
| LK |
2 |
K2-53B |
1454 |
a-Proteobacterium |
AJ133762 |
1359/1412 |
96.25 |
| LA |
3 |
LA5 |
1364 |
a-Proteobacterium |
AJ133762 |
1288/1366 |
94.29 |
| LK |
4 |
K2-75 |
1376 |
a-Proteobacterium |
U70683 |
1270/1349 |
94.14 |
| LA |
5 |
LA33B |
1384 |
a-Proteobacterium |
AB015896 |
1299/1400 |
92.79 |
| LA |
6 |
LA52 |
1330 |
a-Proteobacterium |
AB013079 |
1293/1313 |
98.48 |
| LO |
7 |
Ph15 |
514 |
Caulobacter sp. |
AJ227773 |
507/527 |
96.2 |
| LO |
8 |
Ph12 |
596 |
Erythrobacter citreus |
AF118020 |
593/615 |
96.42 |
| LA |
9 |
LA9 |
1280 |
Marine bacterium |
AJ002565 |
1194/1255 |
95.14 |
| LK |
10 |
K2-76 |
1364 |
Rhizobium loti |
U50165 |
1317/1361 |
96.77 |
| LK |
11 |
K2-57B |
1453 |
Rhizobium sp. |
AY056831 |
1332/1419 |
93.87 |
| LA |
12 |
LA7 |
1363 |
Roseobacter sp. |
AF098495 |
1305/1366 |
95.53 |
| GL |
13 |
G6 |
1437 |
Roseomonas cervicalis |
AY150047 |
1354/1436 |
94.29 |
| PH |
14 |
PH30 |
1396 |
Thalassospira lucentensis |
AB024595 |
1332/1361 |
97.87 |
| LK |
15 |
KA 77 |
1136 |
Uncultured a-Proteobacterium |
AF445712 |
1045/1078 |
96.94 |
| LK |
16 |
K2-53A |
1461 |
Uncultured Rhodobacter LA1-B32N |
AF513928 |
1368/1422 |
96.2 |
| LK |
17 |
K2-19 |
1449 |
Uncultured Rhodobacter LA4-B3 |
AF513932 |
1372/1429 |
96.01 |
| LK |
18 |
K2-12 |
1445 |
Unidentified a-Proteobacterium |
U70683 |
1276/1374 |
92.87 |
| LO |
19 |
L12 |
1398 |
Unidentified a-Proteobacterium |
U70683 |
1263/1340 |
94.25 |
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b-Proteobacteria |
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| LW |
1 |
H2 |
1485 |
Iodobacter fluviatilis |
M22511 |
1418/1466 |
96.73 |
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g-Proteobacteria |
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| LK |
1 |
K55 |
1394 |
Alteromonas alvinellae |
AF288360 |
1153/1194 |
96.57 |
| LK |
2 |
K2-7 |
1528 |
Biphenyl-degrading bacterium |
AB086226 |
1388/1445 |
96.06 |
| LO |
3 |
JB3-27F |
653 |
Halomonas aquamarina |
AJ306888 |
642/662 |
96.98 |
| LO |
4 |
L2-TR |
1415 |
Unculturable Mariana eubacterium |
D87345 |
1413/1415 |
99.86 |
| PH |
5 |
PH27A |
1436 |
Oceanospirillum maris |
AB006763 |
1151/1252 |
91.93 |
| LO |
6 |
JB10-27F |
680 |
Pseudoalteromonas sp. |
AF227238 |
626/651 |
96.16 |
| LO |
7 |
JB18 |
1403 |
Pseudomonas aeruginosa |
AY162139 |
1388/1404 |
95.73 |
| LK |
8 |
K51 |
1355 |
Pseudomonas sp. |
AJ007005 |
1025/1060 |
96.7 |
| LO |
9 |
Ph23 |
673 |
Salinivibrio costicola |
X95532 |
659/694 |
94.96 |
| PH |
10 |
PH35 |
1457 |
Uncultured g-Proteobacterium |
AJ310680 |
1339/1461 |
91.65 |
| LK |
11 |
K2-14 |
1520 |
Uncultured g-Proteobacterium
|
AJ240916 |
1431/1493 |
95.85 |
| LO |
12 |
JB11 |
1408 |
Uncultured soda lake g-Proteobacterium |
X92128 |
1257/1386 |
90.69 |
| LK |
13 |
K10 |
1357 |
Vibrio sp. |
AF246980 |
1256/1338 |
93.87 |
| LK |
14 |
K20 |
1527 |
Vibrio sp. |
AB038029 |
1434/1507 |
95.16 |
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d-Proteobacteria |
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| LK |
1 |
K2-52 |
1595 |
Sulfate-reducing bacterium |
AF216646 |
1384/1429 |
96.85 |
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e-Proteobacteria |
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| LA |
1 |
LA31B |
1402 |
Arcobacter sp. |
L42994 |
1345/1402 |
95.93 |
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Firmicutes |
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| LK |
1 |
K2-72 |
1489 |
Bacillus aestuarii |
AB062696 |
1426/1500 |
95.07 |
| LK |
2 |
K2-24 |
1536 |
Bacillus sp. |
AB055097 |
1486/1536 |
96.74 |
| LK |
3 |
K2-37 |
1508 |
Bacillus sp. |
AB043854 |
1452/1500 |
96.8 |
| LK |
4 |
K2-69 |
1532 |
Planomicrobium sp. |
AF144750 |
1440/1486 |
96.9 |
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Eucarya |
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| LK |
1 |
K38 |
767 |
Nectria cinnabarina |
AB003949 |
667/689 |
96.81 |
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