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August 10, 2003
 
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Summary of Clones/Cultures from the Lakes studied [back]  
       
Table 1. Number and affiliation of Operational Taxonomic Units (OTUs) defined in clone libraries from the site listed, along with the number of phylogenetically distinct cultures. All clones in an OTU share =97% identity over at least 1200 nucleotides.
     
  Laysan Laysan Kauhako Kauhako Waiau Waiau SE Island SE Island
Taxon Clones Cultures Clones Cultures Clones Cultures Clones Cultures
Actinobacteria     2 5 6 3    
a-Proteobacteria 6 10 10 11 1   1 3
b-Proteobacteria 1   2 1 3      
g-Proteobacteria 7 8 12 10 9 3 2 11
d-Proteobacteria 1   2 1        
e-Proteobacteria 3 1     1      
Bacteroidetes 3 3 1 3 3      
Chlamydiae         1      
Chlorobi   1 2          
Chloroflexi 1              
Cyanobacteria   1 2         1
Deinococci 1              
Fibrobacter/Acidobacter     1          
Firmicutes 3 3   13 5 1 2 3
Planctomycetes 3   5   3      
Verrucomicrobia 1   2   2      
Candidate Div. BRC1     1          
Candidate Div. OP3     1          
Candidate Div. OP11     1          
Candidate Div. TM7         1      
Euryarchaeota 1       1      
   
     

Table 2. Potentially novel Bacteria isolated during our Hawaiian lake work and other environmental projects

Note that the Bacteroidetes LA1 is now Psychroflexus tropicus, sp. nov., and the g-Proteobacterium L2-TR is Idiomarina loihiensis, sp. nov.

     
Source   Strain NT Nearest neighbor Accession# Identity %ID
  Actinobacteria            
LK 1 K2-78 1497 Arthrobacter cumminsii X93354 1391/1472 94.5
LK 2 KA72 1291 Arthrobacter sp. AB076400 1237/1275 97.02
LK 3 K2-27 1492 Cellulomonas cartae X79456 1410/1467 96.11
LK 4 K2-66 1526 Nesterenkonia lacusekhoensis AJ290397 1410/1464 96.31
LO 5 Ph1 767 Corynebacterium cf. aquaticum AJ244681 749/781 95.9
LO 6 Ph10 848 Kocuria sp. AB094467 657/679 96.76
  Bacteroidetes            
LK 1 K2-15 1499 Cellulophaga sp. AY035869 1280/1427 89.7
LK 2 K2-1 1506 Cyclobacterium sp. AJ244689 1404/1489 94.09
LA 3 LA48 1396 Flexibacter tractuosus M58789 1346/1391 96.76
LA 4 LA1 1428 Psychroflexus torquis U85881 1350/1433 94.21
  a-Proteobacteria            
LK 1 K2-11 1455 a-Proteobacterium AJ133762 1363/1412 96.53
LK 2 K2-53B 1454 a-Proteobacterium AJ133762 1359/1412 96.25
LA 3 LA5 1364 a-Proteobacterium AJ133762 1288/1366 94.29
LK 4 K2-75 1376 a-Proteobacterium U70683 1270/1349 94.14
LA 5 LA33B 1384 a-Proteobacterium AB015896 1299/1400 92.79
LA 6 LA52 1330 a-Proteobacterium AB013079 1293/1313 98.48
LO 7 Ph15 514 Caulobacter sp. AJ227773 507/527 96.2
LO 8 Ph12 596 Erythrobacter citreus AF118020 593/615 96.42
LA 9 LA9 1280 Marine bacterium AJ002565 1194/1255 95.14
LK 10 K2-76 1364 Rhizobium loti U50165 1317/1361 96.77
LK 11 K2-57B 1453 Rhizobium sp. AY056831 1332/1419 93.87
LA 12 LA7 1363 Roseobacter sp. AF098495 1305/1366 95.53
GL 13 G6 1437 Roseomonas cervicalis AY150047 1354/1436 94.29
PH 14 PH30 1396 Thalassospira lucentensis AB024595 1332/1361 97.87
LK 15 KA 77 1136 Uncultured a-Proteobacterium AF445712 1045/1078 96.94
LK 16 K2-53A 1461 Uncultured Rhodobacter LA1-B32N AF513928 1368/1422 96.2
LK 17 K2-19 1449 Uncultured Rhodobacter LA4-B3 AF513932 1372/1429 96.01
LK 18 K2-12 1445 Unidentified a-Proteobacterium U70683 1276/1374 92.87
LO 19 L12 1398 Unidentified a-Proteobacterium U70683 1263/1340 94.25
  b-Proteobacteria            
LW 1 H2 1485 Iodobacter fluviatilis M22511 1418/1466 96.73
  g-Proteobacteria            
LK 1 K55 1394 Alteromonas alvinellae AF288360 1153/1194 96.57
LK 2 K2-7 1528 Biphenyl-degrading bacterium AB086226 1388/1445 96.06
LO 3 JB3-27F 653 Halomonas aquamarina AJ306888 642/662 96.98
LO 4 L2-TR 1415 Unculturable Mariana eubacterium D87345 1413/1415 99.86
PH 5 PH27A 1436 Oceanospirillum maris AB006763 1151/1252 91.93
LO 6 JB10-27F 680 Pseudoalteromonas sp. AF227238 626/651 96.16
LO 7 JB18 1403 Pseudomonas aeruginosa AY162139 1388/1404 95.73
LK 8 K51 1355 Pseudomonas sp. AJ007005 1025/1060 96.7
LO 9 Ph23 673 Salinivibrio costicola X95532 659/694 94.96
PH 10 PH35 1457 Uncultured g-Proteobacterium AJ310680 1339/1461 91.65
LK 11 K2-14 1520 Uncultured g-Proteobacterium AJ240916 1431/1493 95.85
LO 12 JB11 1408 Uncultured soda lake g-Proteobacterium X92128 1257/1386 90.69
LK 13 K10 1357 Vibrio sp. AF246980 1256/1338 93.87
LK 14 K20 1527 Vibrio sp. AB038029 1434/1507 95.16
  d-Proteobacteria            
LK 1 K2-52 1595 Sulfate-reducing bacterium AF216646 1384/1429 96.85
  e-Proteobacteria            
LA 1 LA31B 1402 Arcobacter sp. L42994 1345/1402 95.93
  Firmicutes            
LK 1 K2-72 1489 Bacillus aestuarii AB062696 1426/1500 95.07
LK 2 K2-24 1536 Bacillus sp. AB055097 1486/1536 96.74
LK 3 K2-37 1508 Bacillus sp. AB043854 1452/1500 96.8
LK 4 K2-69 1532 Planomicrobium sp. AF144750 1440/1486 96.9
  Eucarya            
LK 1 K38 767 Nectria cinnabarina AB003949 667/689 96.81
       

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