Scientists decode western painted turtle genome
Scientists decoded the genome of the western painted turtle, Chrysemys picta bellii, one of the most widespread, abundant and well-studied turtles in North America. This freshwater turtle is only the second reptile species for which complete genome sequences have been assembled and analyzed. The first is the green anole lizard. The research team, which included University of Hawaiʻi at Mānoa Assistant Professor of Biology Robert C. Thomson, announced their findings in a March 28 paper in Genome Biology.
“Turtles are an exceptionally old group of organisms, and they’re also evolving very slowly,” said Thomson, who has worked on the western painted turtle project since 2008. Turtle genomes evolve at about one-third the rate seen in humans, and roughly one-fifth the rate of other reptiles such as the python.
Thomson led the analysis of the turtles’ rate of evolution and phylogenetic relationships—the pattern of evolutionary divergence between turtles and other groups of organisms. These analyses indicate that turtles’ closest living relatives are crocodiles and birds, not snakes and lizards as some previous studies have suggested.
“In many respects, turtles are a very strange group of animals,” Thomson said. “They have a number of novel traits that we can learn from.” For the western painted turtle, these novel traits include the ability to hibernate through long winters by burying themselves in near-freezing mud beneath streams and ponds, surviving with almost no oxygen for up to four months—longer than any other known tetrapod.
Comparative genomic information about animal species is often valuable for scientists working on certain human health-related problems. Understanding how turtles protect their vital organs during periods of oxygen deprivation may one day improve treatment for human victims of heart attack or strokes, researchers say.
The majority of the turtle gene sequencing effort was completed at Washington University’s Genome Institute, which is one of three National Institutes of Health funded sequencing centers in the United States.
No freshwater turtles are native to Hawaiʻi, although three species have been introduced from the pet trade and for food. Five types of sea turtles occur in the Pacific waters off Hawaiʻi’s coasts.