Virginia (Ginny) Tanji,
Librarian, tanji@hawaii.edu
Library Home page
www.hawaii.edu/sphlib
SEARCHING THE MEDLINE
DATABASE via PubMed
OVERVIEW
WHAT IS MEDLINE?
-
online bibliographic database to medicine,
nursing, health services, etc. 1966-present
-
contains bibliographic records of journal
articles (citations)
-
indexes approximately 3900 world-wide biomedical
journals
-
English abstracts are available for the majority
of citations
-
peer reviewed research literature
-
produced by the National Library of Medicine
Where can you search
MEDLINE?
-
Free via the National Library of Medicine
Top
of Page
Sample MEDLINE record
from PubMed
A basic understanding of the individual
records that comprise MEDLINE will help you in your searching
Elements of the Record:
-
Author- format is lastname (family
name) followed by initials.
-
Title--note that the title of the article
is given in full; if this article were in a language other than English,
the title will be in brackets[ ].
-
Journal Title Abbreviation is given
based on Vancouver
Convention
To identify the full
journal title, check vertical blue bar on the left for Journal
Browser
Year of article followed
by semi-colon (;)
Volume issue or supplement
number
Page numbers follow
the colon (:)
-
Abstract--a summary of the contents
of the article written by the author of the article
-
MESH [medical subject headings]
Click
here for full MEDLINE RECORD
Top
of Page Search
PubMed
The text based version of the MEDLINE
RECORD FOLLOWS:
Arch Intern Med 2000 Apr 24;160(8):1154-8
Serum lipid effects of a high-monounsaturated fat diet based on macadamia
nuts. [Title of article]
Curb JD, Wergowske G, Dobbs JC, Abbott RD, Huang B [authors]
Department of Medicine, John A. Burns School of Medicine, University
of Hawaii
at Manoa, Honolulu 96817, USA. curb@phri.hawaii-health.com. [Author
affiliation field]
BACKGROUND: Recent studies have identified potential beneficial
effects of
eating nuts, most of which have substantial amounts of monounsaturated
fats.
Macadamia nuts are 75% fat by weight, 80% of which is monounsaturated.
OBJECTIVE: To examine variations in serum lipid levels in response
to a
high-monounsaturated fat diet based on macadamia nuts. METHODS: A randomized
crossover trial of three 30-day diets was conducted in 30 volunteers
aged 18 to
53 years from a free-living population. Each was fed a "typical American"
diet
high in saturated fat (37% energy from fat); an American Heart Association
Step
1 diet (30% energy from fat); and a macadamia nut-based monounsaturated
fat diet
(37% energy from fat) in random order. Serum total cholesterol, high-density
lipoprotein cholesterol, and triglyceride levels were measured. RESULTS:
Mean
total cholesterol level after the typical American diet was 5.20 mmol/L
(201
mg/dL). After the Step 1 diet and the macadamia nut diet, total cholesterol
level was 4.99 mmol/L (193 mg/dL) and 4.95 mmol/L (191 mg/dL), respectively.
Low-density lipoprotein cholesterol level was 3.37 mmol/L (130 mg/dL)
(typical
diet), 3.21 mmol/L (124 mg/dL) (Step 1 diet), and 3.22 mmol/L (125
mg/dL)
(macadamia nut diet). High-density lipoprotein cholesterol level was
1.43 mmol/L
(55 mg/dL) (typical), 1.34 mmol/L (52 mg/dL) (Step 1), and 1.37 mmol/L
(53
mg/dL) (macadamia nut). Lipid values after the Step 1 and macadamia
nut diets
were significantly different from those after the typical diet (P<.05).
CONCLUSIONS: The macadamia nut-based diet high in monounsaturated fat
and the
moderately low-fat diet both had potentially beneficial effects on
cholesterol
and low-density lipoprotein cholesterol levels when compared with a
typical
American diet.
[Author abstract]
Publication Types:
Clinical trial
Randomized controlled trial
[Publication
type--Describes the type of material the article represents (e.g., Review,
Clinical Trial, Retracted Publication, Letter)
MeSH Terms:
[MESH
= Medical Subject Headings
* major point of article
/ indicates that a subheading is used for more specificity]
MeSH Terms:
Adolescence
Adult
Cholesterol/blood
Cross-Over Studies
Dietary Fats, Unsaturated/administration & dosage*
Fats, Unsaturated
Female
Human
Lipids/blood*
Lipoproteins, HDL Cholesterol/blood
Lipoproteins, LDL Cholesterol/blood
Male
Middle Age
Nuts*
Support, U.S. Gov't, Non-P.H.S.
Triglycerides/blood
Substances:
Cholesterol
Triglycerides
Lipoproteins, LDL Cholesterol
Lipoproteins, HDL Cholesterol
Lipids
Fats, Unsaturated
PMID: 10789609, UI: 20248471
[UI
= unique identifier of this specific citation; PMID number is the identifier
that was assigned before this record was actually indexed at the National
Library of Medicine and subject headings (MESH) were added.]
Top
of Page Search
PubMed
SEARCHING MEDLINE
via PubMed by Author
Note that the blank box below the search
button is where you type the words you want searched.
Searching for citations by author:
Type the author's
name lastname initials if known; you may also qualify with the word author
in brackets
[author] but this is not necessary.
Example:
Type curb jd -- curb
jd [author] -- curb jd [au]
Try this in MEDLINE
Click
here to get to the MEDLINE database via PubMed http://www.ncbi.nlm.nih.gov/PubMed/
Summary Results of search curb jd
Some tips for searching for articles
by specific authors
-
Database does not contain first names but
only the family names and initials of first and middle names
If you know the author does not use a
middle initial you may limit retrieval to first initial only by enclosing
author's name in quotation marks: "brown t"
-
It is not case sensitive except for Boolean
connectors
-
Use capital letters only for Boolean connectors
AND, OR, NOT
-
Qualify by [author] or [au] to limit searching
to author field; braun kl [author] or use LIMITS
-
Navigational tips
-
click on first author to see record including
abstract; change to citation if you want MESH headings as well
-
use back browser button to return to summary
screen
-
click on PubMed box to start with a fresh
screen
Top of
Page Search PubMed
Searching
MEDLINE via PubMed by subject
-
Decide on the appropriate words to search
choose 3-4 words that capture the concepts
you want to search
examples: reproductive health policy
primary care in developing countries
peer counseling for HIV prevention
relationship of salt to hypertension
-
Type the words in the box for search terms
-
Try a search in the PubMed
database
Combining terms
Some tips for searching by subject
-
No hits? click on details
box to see how the system has executed your search
misspelling of words? Too many terms?Try
typing terms with AND between each term
-
Rule of indexing--indexers
must choose the most specific terms available; search on your term in the
MESH browser that can be accessed from the sidebar on the PubMed search
screen
-
Identify a few articles that are very relevant
by searching for a few words in the title of article
qualify each word by [title] and separate
by AND
example: elder [title] AND abuse
[title]
then examine MESH (subject headings)
for other terms to search by clicking on citation before displaying record
or use "related articles" button
-
Related articles
click on this link to find articles closely
related to the article selected
-
Consult your librarian if you need
help with your search strategy.
Search PubMed by
Journal Title
-
Type journal title in full or using the official
NLM abbreviation and qualify with [journal] or [jour]
example: american journal
of public health [journal]
-
Combine with search concept using "AND"
example american journal of public health
[journal] AND family planning
-
To determine the full title of a journal from
its abbreviation; click on journal browser in the sidebar on the opening
PubMed screen and type the journal title abbreviation
-
To determine if a journal is indexed in the
MEDLINE database, type the title in the journal browser search screen.
-
To find all journals which contain the word
AIDS in the title, search on the term aids in the journal browser
Top of
Page Search PubMed
Limiting and
focusing your search to a specific field in the record *
Click on limits
button on search screen and select relevant ones or you may also search
as follows.
All qualifiers must
be enclosed by square brackets [ ]
-
English language articles only;
add eng [la] or english [la]
asthma AND eng [la]
-
Limit your search to title words asthma
[ti] or asthma [title]
-
Limit your search to author [au] or [author]
morens dm [au]
-
Limit your search by date:
1998 publications only
1998 [dp]
1995-present year
1995:1999 [dp]
use "Entrez date limit"
box below the search box
-
Limit to a specific journal subset;
add
one of the following terms to your search
jsubseta
Abridged Index Medicus click
here for a list of journals included in this subset
jsubsetn
Nursing journals
jsubsetd
Dental journals
-
Limit search to institutional affiliation
or address of author [ad]
hawaii [ad]
*Note that limiting by a specific field generally
eliminates the most current records which are labeled "MEDLINE record in
process" or "Record as supplied by publisher."
Top
of Page Search
PubMed
DISPLAYING, SAVING
AND PRINTING YOUR RESULTS
-
Records displayed in reverse chronological
order
-
To view a citation click the author link
-
To view more than one record, mark the records
on the page first then, click on display at the top of page
-
Three different displays that you can choose
from the summary screen--
-
abstract--default includes author,author affiliation,
title, source, and abstract
-
citation--gives all the above and MESH (subject
headings as well)
-
MEDLINE--this is a tagged display which includes
all the elements of the citation display;
suitable for importing into bibliographic
management programs, such as EndNote and Procite
-
PubMed displays 20 records per page.
You must mark, display, and save records on each page to your clipboard
or your marks will be lost. An alternative is to change the number
in the "docs per page" box located below the details box to a number that
exceeds your retrieval.
-
Print from your browser--mark all the records
you want displayed; display them; click on "text" and then click
on file, then print--what you see is what you get. Be sure to use "abstract"
display for record including the abstract and "citation" display if you
want to see the MESH (medical subject headings).
-
Copy and paste your results into a wordprocessing
document and print using your word processor--requires that you toggle
back and forth between your wordprocessor and browser.
-
Save to a file using the PubMed program
-
option given at the top and bottom of the
page
-
give the file an appropriate file name and
file extension; otherwise default is : query.fcgi
-
open file in your wordprocessor
Top of
Page Search PubMed
Obtaining a copy
of a journal article
-
Ordering documents through Loansome Doc--to
do this you need to have an account with a participating library
(i.e. payment arrangements).
-
Full text articles are generally not available
through MEDLINE via PubMed or Internet Grateful Med. There are a
few titles that are available on an experimental basis. The British
Medical Journal is the most notable among these. Also, check
the full-text titles available through Hamilton
Library
-
Check with your librarian for assistance in
obtaining copies of articles.
-
For School of Public Health faculty, staff
and students click
here
Other Tutorials for
Searching MEDLINE
HomeTop
of Page Search
PubMed
Library, School of Public
Health, University of Hawaii, (808) 956-8666
Please send your comments,
suggestions, or questions to Virginia Tanji, Librarian
tanji@hawaii.edu
updated 6/4/00